Building an OptIPlanet collaboratory to support microbial metagenomics

We describe early experiments in the adoption of the OptIPuter architecture to provide data-intensive capabilities to several remote users of a large-scale, multi-year effort to organize and make publicly available data describing a wide variety of marine microbial ecologies, their genomic content, and the local environments in which they live—marine microbial metagenomics. Microbial genomes are millions of base pairs in length, requiring both a global view of the genome and the ability to zoom into detail interactively, enabled by the OptIPortal. We describe the design of a scientific data and compute server, enhanced byOptIPuter technologies, and early examples of its use in support of high performance science applications in this emerging scientific field. © 2008 Elsevier B.V. All rights reserved.